In the opening scene we come from a God's eye view of Earth to the CIA headquarters. Therein, John Malkovich gets fired from his job as a CIA Balkans analyst. He says his firing is a crucifixion and stands with his hands out wide. He is Jesus. In the very next scene he's being asked about picking up "cheeses" (Jesus) because the Pharaohs are coming to dinner. Fun stuff.
The political messages are subtle but strong. On a boat at sea, Malkovich tells his silent father (God) that he quit his job because it is not the same as when he (God) was "in State." Malkovich's Jesus character guesses that perhaps it is the end of the Cold War (when we were fighting Godless communists). Now government seems to be "all bureaucracy and no mission."
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